Challenges in clinical translation of cardiac magnetic resonance imaging radiomics in non-ischemic cardiomyopathy: a narrative review
Introduction
Background
Cardiac magnetic resonance imaging (MRI) is radiation-free modality with high spatial resolution, enabling the characterization of myocardial structure and tissue (1). Cine sequence in MRI assesses cardiac function, with short-axis and long-axis views facilitating the morphological examination of cardiac anatomical structures. Late gadolinium enhancement (LGE) enables the noninvasive identification of myocardial necrosis and fibrosis, while perfusion is primarily employed to assess myocardial ischemia. Advancements such as T1 mapping, T2 mapping, and feature tracking, are instrumental in detecting diffuse myocardial fibrosis, edema, and cardiac deformational capacity (2,3). Therefore, MRI is essential for assessing cardiac structure, function, myocardial fibrosis, and ischemia, and is indispensable in the diagnosis, risk stratification, and prognosis of cardiomyopathy, myocarditis, and other structural heart diseases (4). However, imaging in multiple planes, parameters, and sequences results in prolonged magnetic resonance (MR) scan times. Due to the complex and varied causes of cardiomyopathy, diagnosing this condition often requires analyzing images from multiple MRI sequences, a task that demands significant clinical expertise (5). Consequently, there is a need to develop new methods to enhance the usability and accessibility of cardiac MRI in clinical practice.
Rationale and knowledge gap
Radiomics, an emerging image analysis technique, extracts a multitude of shapes, textures, and higher-order features from complex clinical imaging data, transforming these into analyzable high-dimensional data. It then identifies radiological features of clinical diagnostic significance, followed by statistical analysis (6,7). For example, radiomics is well established in oncology, in which it is used to determine the probability of benign versus malignant tumors, predict clinical prognostic events, and improve diagnostic, prognostic, and clinical decision support (8). However, its applications in cardiac imaging are still relatively limited. Currently, cardiac imaging primarily utilizes images obtained from computed tomography (CT) and MRI. In CT, its main applications include the evaluation of vulnerable plaques in coronary arteries, and advanced atherosclerotic lesions. In MRI, cardiac radiomics has been independently associated with gender, age, and cardiovascular risk factors in extensive studies involving healthy populations (9,10). Within disease groups, its primary applications lie in structural heart disease, cardiomyopathy, and myocarditis (11). The evolving landscape of cardiac MRI is captured in a recent editorial (12) that delves into the quantitative imaging of the heart and the organs affected by its dysfunction, as well as the growing interest in non-invasive MR methods that eschew contrast enhancement. Cardiac MRI is recognized as the gold standard for diagnosing cardiomyopathies, with radiomics serving as a valuable adjunct in the assessment of cardiac structure and function. Consequently, a comprehensive understanding of the clinical applications and imaging workflows in cardiac MRI histology can markedly enhance the diagnostic precision of clinicians and refine the prediction of clinical outcomes.
Objective
Non-ischemic cardiomyopathies encompass a diverse group of myocardial diseases with varying mechanisms and pathophysiological features. Diagnosing these conditions requires clinicians to synthesize information from multiple sources, including clinical presentation, imaging findings, and histopathology. This complexity poses significant challenges in diagnosis, demanding a high level of clinical expertise. Radiomics, with its ability to extract detailed quantitative features from MRI, offers a promising non-invasive approach to assessing these intricate conditions. This article focuses on the potential of radiomics in non-ischemic cardiomyopathies, aiming to enhance diagnostic accuracy and inform clinical decision-making. It also seeks to familiarize clinicians with the fundamental concepts and workflow of radiomics, while summarizing its current applications in MRI for these diseases. We present this article in accordance with the Narrative Review reporting checklist (available at https://cdt.amegroups.com/article/view/10.21037/cdt-24-138/rc).
Methods
Relevant studies published from January 1, 1973, to August 1, 2024, were retrieved through a comprehensive PubMed search. The search included various combinations of key terms related to cardiovascular magnetic resonance, radiomics, and specific cardiac conditions such as hypertrophic cardiomyopathy (HCM), dilated cardiomyopathy (DCM), and myocarditis. Specific imaging techniques like LGE, T1 mapping, and cine imaging were also included. These terms were combined to identify relevant studies exploring the use of radiomics in conjunction with cardiovascular MR for these conditions. A more detailed breakdown of the search terms is provided in Table 1. Additional studies were identified through manual reference checks of pertinent articles. Non-English publications and studies of low credibility were excluded. Data extraction focused on the relevance to the research topic rather than a systematic review approach. More details of the search strategy are shown in Table 2.
Table 1
“cardiovascular magnetic resonance” OR “radiomics” AND “hypertrophic cardiomyopathy” |
“cardiovascular magnetic resonance” OR “radiomics” AND “dilated cardiomyopathy” |
“cardiovascular magnetic resonance” OR “radiomics” AND “myocarditis” |
“late gadolinium enhancement” AND “radiomics” AND “hypertrophic cardiomyopathy” |
“late gadolinium enhancement” AND “radiomics” AND “dilated cardiomyopathy” |
“late gadolinium enhancement” AND “radiomics” AND “myocarditis” |
“T1 mapping” OR “native T1” AND “radiomics” AND “hypertrophic cardiomyopathy” |
“T1 mapping” OR “native T1” AND “radiomics” AND “dilated cardiomyopathy” |
“T1 mapping” OR “native T1” AND “radiomics” AND “myocarditis” |
“cine” AND “radiomics” AND “hypertrophic cardiomyopathy” |
“cine” AND “radiomics” AND “dilated cardiomyopathy” |
“cine” AND “radiomics” AND “myocarditis” |
Table 2
Items | Specification |
---|---|
Date of search | A second round of literature search up to August 1, 2024 |
Database searched | PubMed |
Search terms used | See Table 1 for details |
Timeframe | January 1, 1973 to August 1, 2024 |
Inclusion and exclusion criteria | Inclusion: original research articles and reviews in English about radiomics, CMR, and cardiomyopathies. Exclusion: papers with low reliability |
Selection process | It was conducted independently by J.D., L.Z., B.L.; data selection is the intersection of the search of three authors |
Additional consideration | Additional papers were identified through the review of references in relevant publications |
CMR, cardiac magnetic resonance.
Radiomics workflow
The workflow is depicted in Figure 1. Table 3 provides a detailed illustration of the radiomics workflow in cardiac MRI.
Table 3
Steps | Details and some examples |
---|---|
Image acquisition | Include sequences: short-axis, long-axis, cine, T1 mapping, T2 mapping, T2-weighted, perfusion, delayed enhancement |
Image pre-processing | |
Traditional denoising | Median filtering, non-local mean, sparse representation |
Deep learning denoising | Generative adversarial networks |
Standardization | Z-scoring, aligned coordinate system, resampling |
Generalizable methods | ComBat Harmonization |
Region of interest selection | |
Traditional methods | Manual mapping, threshold segmentation, region growing, level set |
Deep learning | U-Net |
Feature extraction | |
First-order features | Minimum, maximum, decile, ninetieth, mean, median, interquartile range, standard deviation, root mean square, skewness, kurtosis, variance, uniformity, energy |
Shape-based features | Perimeter, area (volume), and diameter |
Texture features | Gray level cooccurrence matrix, gray level size zone matrix, gray level run length matrix, neighborhood gray tone difference matrix, gray level dependence matrix |
Higher-order features | Edge detection filters (Sobel, Prewitt, Canny), texture filters (Gabor, Haralick, Marr-Hildreth), scale-space filters (Gaussian pyramid), frequency-domain filters (Fourier, wavelet transform) |
Feature engineering | |
Feature selection | Filtering, packing, embedding |
Dimensionality reduction | Principal component analysis, T-distributed stochastic neighborhood embedding |
Model construction | |
Traditional machine learning | Random forest, support vector machine |
Deep learning | Convolutional neural network |
Model validation | Metrics (sensitivity, specificity, receiver operating characteristic curve), k-fold cross-validation |
Statistical analysis | Descriptive statistical analysis (mean, standard deviation, maximum, minimum values), analysis of variance |
MRI, magnetic resonance imaging.
Image acquisition
A prerequisite for radiomics analysis is the acquisition of cardiac images obtained from MRI examinations in patients. This process involves multiple sequences, such as short-axis, long-axis, cine, T1 mapping, T2 mapping, T2-weighted, perfusion, and delayed enhancement. Each cardiac MRI sequence has its own unique role: (I) cine sequences are capable of assessing cardiac morphology and function, but are susceptible to motion and respiratory artefacts; (II) T1 mapping can be used to quantify diffuse myocardial fibrosis, but results are limited by differences in equipment, magnetic field strengths and pulse sequences; (III) T2 mapping is effective in detecting oedema, but may lack precision in certain pathological conditions; (IV) stress myocardial perfusion imaging is mainly used to assess myocardial ischemia and coronary reserve function, but there is a risk of inducing myocardial infarction due to vasoconstriction induced by stress agents; (V) LGE is the gold standard for detecting local myocardial fibrosis, but the technique requires the use of a contrast agent and is time-consuming (13).
Figure 2 illustrates the MRI sequences in a patient with HCM. The study received approval from the Review and Ethics Committee of the hospital (No. 2021KS-XN-1202). Informed consent was obtained from the participant. Radiomics can be applied to these multi-sequence cardiac MRI images to extract high-dimensional data for diagnostics, revealing subtle patterns that are not discernible to the human eye. Advanced imaging techniques (14), such as two-dimensional imaging and the application of cardiac and respiratory gating, are frequently employed to enhance image quality by mitigating motion artifacts. This refinement is essential for facilitating precise radiomic analysis.
Image pre-processing
While established guidelines and consensuses aim to standardize cardiac MRI data acquisition protocols (15), the implementation of these standards can vary across institutions, leading to variations in scanning instruments and techniques. Additionally, differences in radiologists’ experience and expertise can introduce discrepancies in image interpretation and analysis. These factors contribute to the variability observed in cardiac MRI image (16), emphasizing the importance of harmonization efforts and the continuous refinement of standardized protocols to minimize these differences. Consequently, specific preprocessing operations must be performed the images to ensure data quality and consistency.
Firstly, common issues in cardiac MRI, such as noise and motion artifacts, necessitate image denoising. Denoising techniques can be broadly categorized into traditional methods and those leveraging deep learning. Traditional denoising approaches primarily involve filters [median filtering (17), non-local mean (18), wavelet transform (19), etc.] and other image processing techniques [e.g., sparse representation (20)]. In contrast, deep learning-based techniques, such as those proposed by Zhao et al. (21), employ neural networks for automated image denoising and high-quality reconstruction, utilizing generative adversarial networks coupled with super-resolution techniques.
Secondly, the standardization of acquired images (e.g., Z-scoring, aligned coordinate system, resampling) is crucial to ensure data consistency in terms of orientation, resolution, and other parameters. This standardization enables the comparison and combination of different data, enhancing the usability and interpretability of the results. Additionally, image alignment which matches or superimposes images acquired under different conditions, is vital for comparing data across modalities or patients. Moreover, the adoption of generalizable pre-processing methods such as ComBat Harmonization (22) is imperative, as these techniques have proven effective in ensuring the stability of cardiac MRI-derived radiomic features across varying imaging parameters. Such stabilization is essential for radiomic studies of multi-center datasets.
Region of interest (ROI) selection
ROI selection involves extracting specific anatomical structures or specific areas from cardiac MRI images (23) for further analysis, which are relevant to the study. This process determines the direction and outcomes of subsequent feature extraction and data analysis. Traditional methods include:
- Manual mapping is the most traditional method of ROI extraction, where the physician delineates the lesion of interest on the image using a drawing tool via human-computer interaction. This method is typically applied to smaller structures or specific lesion areas, such as the endocardium and epicardium.
- Threshold segmentation, such as the Otsu (24), is a commonly used traditional ROI extraction technique. It designates pixels in the image with gray values above or below a threshold as ROIs by setting a grayscale threshold. This method is particularly suited to cases with distinct gray values contrasts, such as in the extraction of structures such as tumors and blood vessels.
- Region growing (25) is an ROI extraction method that relies on the similarity of pixel gray values. It begins from a seed point and grows the surrounding regions with similar gray values to the seed point until a specific growth criterion is met. This method is more applicable when extracting structures with ambiguous boundaries, such as ventricular wall.
- Other traditional methods include the level set method (26), a technique based on partial differential equation. It converts the image segmentation problem into minimizing an energy function, enabling semi-automatic or fully automatic ROI extraction by extrapolating the ROI boundaries through mathematical equations. This method is advantageous in extracting complex structures, such as the atrial cavity.
Deep learning (27) is an emerging technology that involves training network models to automatically learn and extract ROI from images. This approach performs well on ROI extraction tasks involving large-scale data and complex structures, such as removing myocardial infarction regions (28). These classifications are not mutually exclusive, and some methods can be combined. The selection of the most appropriate ROI extraction method should be based on the characteristics of cardiac MRI images, research objectives, data volume, and the desired level of automation. Additionally, ROI selection should involve choosing representative regions, integrating clinical background and research questions, and ensuring that the selected ROIs are anatomically and physiologically significant.
Feature extraction
In cardiac MRI, feature extraction means transforming information from the ROI into quantitative features. According to Mayerhoefer et al. (29), these features are categorized into first-order, shape-based, texture, and higher-order features. The features defined below are align with those described by Zwanenburg et al. (30) and conform to the definitions provided by the Imaging Biomarker Standardization Initiative (31).
First-order features
First-order features analyze a single pixel or voxel based on the global grayscale histogram. The first category includes metrics such as minimum, maximum, decile, ninetieth, mean, median, interquartile range, standard deviation, and root mean square. The second category, which describes the shape of the intensity distribution, includes skewness, kurtosis, variance, and uniformity. Additionally, energy metrics related to the magnitude of pixel or voxel values in the image are included.
Shape-based features
Shape-based features describe the size and shape of the ROI, representing information about the geometric structure of the cardiac anatomy. These features are conceptually straightforward, interpretable, and clinically applicable. Common shape-based features include perimeter, area, and diameter.
-
Perimeter: the number of pixels that border the ROI, used to characterize heart valve contours and identify issues such as leaflet abnormalities or fibrous hyperplasia. -
Area: measures the dimensions of cardiac structures by evaluating the pixel count within the ROI, providing a direct assessment of heart morphology. It helps assess the size and degree of dilatation in conditions such as myocardial infarction and cardiomyopathy. -
Diameter: represents the ROI’s width, often used to quantify the size of the cardiovascular lumen. Measuring the diameter of the vessels can identify issues such as coronary artery, aortic, and pulmonary artery stenosis.
Texture features
Texture features are commonly utilized for the quantitative characterization of lesions (32). In imaging histology, which mirrors the traditional histological analysis performed with imaging technologies, the characteristic features are commonly extracted through the application of sophisticated computational matrices, categorized according to their respective methods:
- Gray level cooccurrence matrix (GLCM): describes the relationship between a pixel’s gray level and that of its neighboring pixels. Haralick et al. (33) proposed 14 statistics based on the GLCM, including energy, entropy, contrast, uniformity, correlation, variance, sum mean, sum variance, entropy, difference variance, difference mean, difference entropy, relevant information measure, and maximum correlation coefficient. These metrics offer diverse perspectives on an image’s texture characteristics, such as uniformity (texture thickness), entropy (complexity), and contrast (clarity).
- Gray level size zone matrix (GLSZM) (34): assess the distribution of zones formed by pixels of the same gray level in an image, characterizing texture features, and the distribution of gray levels.
- Gray level run length matrix (GLRLM) (35): focuses on the continuity of gray levels or gray values in an image by calculating the run length and distribution of consecutively occurring pixels with the same gray level.
- Neighborhood gray tone difference matrix (NGTDM) (36): calculates the difference between a pixel’s gray level and the average gray level of neighboring pixels. Key texture features include entropy, mean, directionality, roughness, and busyness.
- Gray level dependence matrix (GLDM): describes the gray level relationship between the central pixel and its surrounding domain pixels (37). Similar to GLSZM but with a restriction on the distance between neighboring pixels.
Higher-order features
Higher-order features generally involve using filter transforms to extract relevant features from an image. Filter-based feature extraction (38) is commonly employed to enhance features such as texture, edge, shape.
- Edge detection filters: (e.g., Sobel, Prewitt, Canny) identify the edges of the heart and blood vessels in MRI images, aiding in the segmentation of cardiac structures such as ventricular and atrial walls.
- Texture filters: (e.g., Gabor, Haralick, Marr-Hildreth) extract the texture features of cardiac tissues in MRI images, helping to differentiate various cardiac tissue types, such as myocardium, fat, and vessel walls.
- Scale-space filters: (e.g., Gaussian pyramid) facilitates the smoothing of MRI images at different scales and the extraction of multi-scale cardiac structural features.
- Frequency-domain filters: (e.g., Fourier or wavelet transform) enable the conversion of cardiac MRI images from the image domain to the frequency domain, aiding in the extraction of frequency features, such as heartbeat cycles.
Feature engineering
Feature engineering (5) encompasses feature selection and dimensionality reduction techniques, aim to eliminate redundant features that may lead to model overfitting, identify the optimal set of radiomics features for modeling, and prevent feature correlations from impacting analysis results. This ensures the model’s robust generalization performance during both internal validation and external testing.
- Feature selection (39) is categorized into three methods:
- Filtering: this method scores each feature based on its relevance or significance, retaining those with higher relevance to the target variable. Standard techniques include the Pearson correlation coefficient, chi-square test, and mutual information.
- Wrapping: this approach typically employs machine learning algorithms such as random forest (RF), support vector machine (SVM) (40). It trains the model on various feature subsets using cross-validation or other validation methods, ultimately selecting the subset that performs best in internal validation and external testing.
- Embedding: this method integrates feature selection into the model’s training process. It involves obtaining weight coefficients of each feature and selecting features based on these coefficients, usually employing techniques such as the L1 regularization penalty.
- Dimensionality reduction involves decreasing the number of data features. Common methods include:
- Principal component analysis (PCA) (41): PCA uses linear transformations to covert the original n-dimensional feature space to a k-dimensional space. The resulting k-dimensional variables, known as principal components, recombine correlated features into a smaller set of uncorrelated new features.
- T-distributed stochastic neighborhood embedding (T-SNE) (42), initially intended for data visualization in low latitude space, T-SNE is a nonlinear dimensionality reduction technique. It maps high-dimensional data into a low-dimensional space (usually 2 or 3 dimensions) while preserving local dataset characteristics.
The goal of dimensionality reduction is to maintain as much of the original image information as possible while reducing computational complexity and mitigating the effects of the curse of dimensionality.
Model construction
Once features have been selected and dimensionality reduced, the data can be modeled using two common methods:
- Traditional machine learning: RF (43) is an ensemble learning method that combines multiple decision trees for classification and regression tasks. It works by aggregating the predictions of individual trees to improve accuracy and robustness. SVM (44) is a classical algorithm for binary and multiple classification. SVM works by identifying an optimal hyperplane to separates different classes sample points. It is also applicable to regression tasks, where it minimizes the distance between sample points.
- Deep learning: the convolutional neural networks (CNNs) (45) has emerged as a prominent model, known for their multi-level feature extraction capability. They excel at automatically learning and extracting abstract features from raw data, reducing the need for manual feature engineering (46). Through multi-level convolution and pooling operations, CNN can effectively capture high-level abstract features in data such as cardiac MRI images, allowing them to perform complex data modeling and classification tasks quickly and efficiently.
In MRI radiomics, these methods can be employed to classify cardiac diseases for example myocardial infarction, cardiomyopathy, and to predict cardiac functional features such as ventricular volume and ejection fraction (47).
Model validation is essential to assess the model’s performance and generalization ability with new data:
- Hold-out:
for large datasets, the hold-out method divides the dataset into a training set and a test set, typically with a ratio of 7:3 or 8:2. The model is trained on the training set and assessed on the test set, using metrics such as sensitivity, specificity, receiver operating characteristic (ROC) curve. - Cross-validation: for small datasets, cross-validation divides the dataset into k subsets to fully utilize the data. One subset is used as the validation set, and the rest as the training set. This process is repeated k times, each time with a different validation set, and the average performance metrics are calculated.
In cases of dataset imbalance (e.g., low sample size for certain heart disease categories), stratified sampling is crucial to maintain appropriate representation of each category in both the training and test sets.
Statistical analysis
Statistical analysis plays a crucial role in processing and interpreting imaging data and model results in radiomics. Various statistical methods are employed to summarize, analyze, and interpret the statistical significance of data features and model outcomes, yielding meaningful information for disease diagnosis and treatment.
Descriptive statistical analysis
Involves data characteristics, such as mean, standard deviation, maximum and minimum values. This analysis helps understand the overall distribution of imaging data and compares model results.
Analysis of variance (ANOVA)
Used to compare differences between multiple groups. It can identify differences in the image features between different case or treatment groups, helping to pinpoint disease-related image features. In modeling, ANOVA can compare the generalization performance of models across different datasets.
Regression analysis
Models the association between an imaging feature and a target variable, such as disease risk or prognosis. It helps predict a patient’s risk of disease or treatment outcome.
Reasonable statistical analysis of imaging data and experimental results is essential for identifying disease-related imaging features, optimizing disease diagnosis and treatment strategies, and enhancing the application value of medical imaging.
Cardiac MRI radiomics in non-ischemic cardiomyopathy
Non-ischemic cardiomyopathies, diverse in origin, are linked to disturbances in the heart’s mechanical and electrical activity. These conditions are typically characterized by ventricular hypertrophy or dilatation, not attributable to pressure or volume overload or coronary artery disease (CAD), and often lead to cardiac death or dysfunction with progressive heart failure. Non-ischemic cardiomyopathies can be categorized into genetic (HCM, arrhythmogenic right ventricular cardiomyopathy), mixed (genetic and acquired DCM), and acquired (myocarditis) (48). This section focuses on the clinical applications of radiomics in the diagnosis and management of HCM, DCM, and myocarditis, the three most typical non-ischemic cardiomyopathies. Myocardial biopsy and cardiac MRI are the primary diagnostic tools for cardiomyopathy. Given the invasive nature of myocardial biopsy, MRI has become the essential, non-invasive diagnostic tool for non-ischemic cardiomyopathy.
MRI facilitates the non-invasive evaluation of cardiac structural, functional, and vascular abnormalities, including the evaluation of cardiac chamber morphology and function, myocardial tissue properties, perfusion, and microcirculatory dysfunction (49). However, challenges arise when using MRI as the sole diagnostic modality for cardiomyopathy. For instance, MRI cine sequences from patients with HCM and hypertensive cardiomyopathy (HHD) may both indicate left ventricle (LV) myocardial hypertrophy and could be negative for LGE. However, the T1 mapping values in these conditions may be similar, which is not consistent with the expected results (50) and can be misleading as they do not accurately reflect the distinct pathological process. In HCM, an increase in focal and diffuse collagen fiber deposition is anticipated, whereas in HHD, the findings are attributed to cardiomyocyte hypertrophy. The study (51) has shown that T1 mapping in LGE (−) HCM patients is comparable to that of normal healthy volunteers, resulting in an inability to make a diagnosis based on a single MRI sequence. These findings highlight the need for further technological advancements in cardiac MRI to improve its diagnostic accuracy.
The advancement of radiomics have shown promise in enhancing the diagnostic capabilities of cardiac MRI. Numerous studies (52,53) have demonstrated the potential of integrating cardiac MRI with radiomics to identify differences between diseases and various subtypes within the same disease (54). Table 4 outlines the demographic characteristics, radiomic features, and associated tools of radiomics in different cardiac MRI sequences, such as T1 mapping, LGE, and cine, for typical non-ischemic cardiomyopathy. Despite variations in MRI equipment, magnetic field strength, imaging parameters, and gadolinium dose across institutions, radiomics can extract and analyze multiple features from cardiac MRI images, yielding results that are independent of these factors (30). The radiomics process is generalizable: parameters set for one study are generally typically apply to others. For example, radiomics parameters used for 1.5T cardiac MRI images of Siemens can also be applicable to 3.0T images from Philips and General Electric, underscoring its versatility as a multimodal technique (63). It is important to note, however, that preprocessing steps required may vary. Since each study has a unique ROI and focuses on different features, researchers often adjust radiomics parameters to optimize experimental outcomes.
Table 4
Disease | Sequence | References | Patients | Age† (years) | Male, n [%] | Populations | Radiomic features | Radiomic tools |
---|---|---|---|---|---|---|---|---|
HCM | T1 mapping | Neisius et al. (55) | 232 | 55±14 | 166 [72] | HCM, HHD, healthy | TA: histogram, run-length matrix, co-occurrence matrix, LBP | ROI selection: manually; feature extraction: MATLAB; data analysis: SPSS |
LGE | Fahmy et al. (56) | 1,229 | 52±16 | 766 [62] | HCM, SCD | TA: histogram, cooccurrence matrix, size zone matrix, run length matrix, gray tone matrix, dependence matrix | ROI selection: manually; feature extraction: pyradiomics; data analysis: Python, R, MATLAB | |
Cine | Pu et al. (57) | 273 | 55 | 183 [67.54] | HCM | The maximal wall thickness slice and the entire left ventricular myocardium | ROI selection: manually segmented by ITK-SNAP; feature extraction: pyradiomics; data analysis: SPSS, R | |
DCM | T1 mapping | El-Rewaidy et al. (58) | 321 | 55±15 | 225 [70] | DCM, HCM, healthy | TA: histogram-based features, GLRLM, GLCM, LBP | ROI selection: manually; feature extraction: MATLAB; data analysis: SPSS, MATLAB |
LGE | Shu et al. (59) | 114 | 47.5 | 77 [67.5] | DCM | TA: GLCM contrast, GLCM difference average, GLCM difference entropy | ROI selection: manually drawn by CVI42; feature extraction: pyradiomics; data analysis: SPSS | |
Cine | Zhang et al. (60) | 283 | – | – | DCM, HCM, healthy | TA: Gini index, relief, information gain, gain ratio, Euclidean distance, FAOV, mutual information maximization, and joint mutual information | ROI selection: manually; feature extraction: pyradiomics; data analysis: SPSS | |
Myocarditis | T1 mapping | Baessler et al. (61) | 39 | 34.7±12.2 | – | Myocarditis, healthy | TA: T2 run-length nonuniformity and T2 gray-level nonuniformity | ROI selection: manually drawn by MaZda; feature extraction: MaZda; data analysis: R |
LGE | Di Noto et al. (62) | 173 | MI: 66±9; myocarditis: 39±15 | MI: 99 [94] myocarditis: 54 [87] |
MI, myocarditis | TA, shape, and first-order descriptors | ROI selection: manually drawn by 3DSlicer; feature extraction: pyradiomics; data analysis: N/A |
†, data are presented as median or mean ± standard deviation. SPSS, Statistical Package for the Social Sciences; CVI42 and ITK-SNAP are software tools used for medical image analysis. HCM, hypertrophic cardiomyopathy; HHD, hypertensive cardiomyopathy; SCD, sudden cardiac death; DCM, dilated cardiomyopathy; TA, texture analysis; LBP, local binary patterns; ROI, region of interest; LGE, late gadolinium enhancement; GLRLM, gray-level run-length matrix; GLCM, gray-level co-occurrence matrix; MI, myocardial infarction; N/A, not applicable; MRI, magnetic resonance imaging.
HCM
HCM is a prevalent genetic cardiomyopathy occurring in 1 out of every 500 individuals. It is characterized by diverse phenotypes, microvascular dysfunction, and myocardial fibrosis (64). MRI of HCM typically shows asymmetric ventricular hypertrophy, patchy or punctate foci of high-delayed enhancement in the mid-myocardium, and elevated global T1 mapping (65,66). Differentiating between concentric HCM, HHD, and exercise-induced cardiac hypertrophy poses a diagnostic challenge because all three conditions can exhibit left ventricular hypertrophy with positive delayed enhancement. Although T1 mapping can help differentiate among these conditions (50,67), the overlap in T1 mapping values can complicate its practical clinical application.
Radiomics is particularly well-suited for diagnosing HCM due to its robust generalization capabilities. Radiomics-based T1 mapping, incorporating histogram and texture analysis, has shown promise in distinguishing HCM patients from healthy volunteers and those with HHD, cardiac amyloidosis, left heart insufficiency, and DCM (68). In a study by Neisius et al. (55), 232 patients were classified into HCM and HHD groups and six texture features from T1 mapping images were identified that effectively differentiated between HHD and HCM. The diagnostic accuracy of the texture features reached a maximum of 86.2% [95% confidence interval (CI): 0.769 to 0.903], with a validation set accuracy of 80% (95% CI: 0.77 to 1.00). In contrast, the diagnostic accuracy of the global native T1 mapping in distinguishing between the two was 64% (95% CI: 0.452 to 0.640). Therefore, radiomics analysis of native T1 images can differentiate between these diseases more accurately than conventional global T1 mapping. Additionally, it has been shown (54) that radiomics analysis using native T1 mapping can distinguish β-myosin heavy chain- and β-myosin-binding protein C- associated HCM.
LGE is a strong predictor of sudden cardiac death (SCD) in patients with HCM. A study by Fahmy et al. (56), involving 1,229 HCM patients for 4 years, found that myocardial LGE radiomics strongly correlates with SCD risk and enhances the prognostic value of current ESC or AHA/ACC risk models.
HCM diagnosis often relies on a positive LGE or T1 mapping, but LGE requires gadolinium contrast injection, which poses potential risks to the patient’s brain and kidneys. Recent research by Pu et al. (57), indicates that certain diagnostic assessments can be made using cine imaging alone, without LGE. In their study, 273 HCM patients were divided into validation and test sets in a 7:3 ratio. They extracted two radiomics features: maximum ventricular wall thickness slices and entire left ventricular myocardium to create five predictive models. In the validation set, the model based on the whole left ventricular myocardium demonstrated superior diagnostic performance, with an area under curve value (0.898), diagnostic accuracy (89.02%), sensitivity (92.54%), and F1 score (93.23%) in LGE-positive patients. The predictive model, incorporating whole left ventricular myocardium images and radiological features, shown strong diagnostic performance, robustness, and clinical application value. Additionally, Zhang et al. (69) demonstrated that integrating cine-cardiac MRI radiomic features with established predictive indicators can effectively identify HCM patients at an elevated risk of developing heart failure. This suggests that radiomics can serve as a complementary tool to traditional cardiac MRI analysis for HCM patients, with cine imaging providing a valuable diagnostic complement (70) to LGE in the comprehensive evaluation of left ventricular function and structure.
DCM
DCM is characterized by abnormal ventricular dilation and systolic dysfunction, evidenced by an abnormal left ventricular ejection fraction, without the presence of CAD or abnormal loading conditions. DCM can have both genetic and non-genetic causes, including drugs, toxins, and other cardiomyopathies (71). Early stages of DCM are often asymptomatic, but advanced DCM can manifest as heart failure, posing life-threatening risks (72). MRI in DCM typically reveals ventricular enlargement, reduced ejection fraction, and foci of LGE in the middle layers of the myocardial ventricular wall.
T1 mapping is crucial in diagnosing, treatment, and predicting prognosis of DCM patients. However, the native T1 and extracellular volume fraction (ECV) values in DCM and HCM are often similar (73), making it challenging to distinguish between these two diseases using T1 mapping alone. Radiomics, which can extract both superficial and deep features from images, is well-suited for this clinical situation (Figure 3). The study (58) has shown that texture analysis of myocardial native T1 mapping can differentiate different fibrosis patterns in DCM and HCM. Additionally, radiomics of native T1 has been shown to predict adverse cardiovascular events in patients with non-ischemic cardiomyopathies undergoing left ventricular reverse remodeling (74), as well as the likelihood of cardiac transplantation and all-cause mortality (75), outperforming conventional native T1 in these predictive roles. Recent study has demonstrated that radiomics extracted from T1 mapping and LGE can identify extracellular matrix components and subtle chronic inflammation in DCM (76).
LGE is an independent prognostic factor for adverse cardiovascular outcomes in DCM. Shu et al. (59) applied radiomics to LGE analysis in 114 DCM patients with severely reduced left ventricular ejection fraction <35%. The study extracted texture features from LGE images and followed up on outcomes such as heart transplantation and all-cause mortality. The findings showed that three texture features from the GLCM were significantly (P<0.05) associated with adverse outcomes, indicating their potential as independent prognostic factors. Therefore, texture analysis of LGE emerges as a novel marker for risk stratification in DCM with severe LV systolic dysfunction.
Radiomics applied to cardiac cine sequences presents an effective method for distinguishing DCM from other diseases and healthy individuals. Zhang et al. (60) utilized ten feature selection methods for the left and right ventricles, and myocardium for DCM, HCM, and healthy individuals. They combined these features with nine classical machine learning methods based on the cardiac MRI radiomics, achieving an accuracy rate of 91.2%. Additionally, cine sequence-based radiomics can differentiate between DCM, left ventricular noncompaction, HCM, and healthy individuals (53). Differentiating between ischemic cardiomyopathy and DCM using cine sequences can be challenging for clinicians. However, Deng et al. (77) have shown that by integrating radiomic analysis with machine learning techniques in cine-cardiac MRI, it is feasible to distinguish DCM from ischemic cardiomyopathy. This approach minimizes the need for invasive diagnostic procedures and expedites the diagnostic process.
Myocarditis (inflammatory cardiomyopathy)
Myocarditis (78), an inflammatory myocardial disease caused by viral infections, drugs, toxins, or autoimmune inflammation, is a leading cause of heart failure, chronic DCM, and SCD. While myocardial biopsy is the gold standard for diagnosing myocarditis, its invasive nature and low sensitivity limit its clinical application. MRI enables the non-invasive diagnosis of suspected myocarditis and offers prognostic information for confirmed cases, making it an important assessment tool. The 2018 Lake Louise Criteria (LLC) (79) for cardiac MRI in myocarditis state that a diagnosis is made when at least one of the following criteria is met: (I) increase T2-weighting or T2 mapping in the global or localized myocardium; and (II) increased T1 mapping, ECV, LGE. High diagnostic performance is achieved if both are satisfied, but specificity is low if only one criterion is satisfied.
Radiomics has shown promise in diagnosing myocarditis. Texture analysis of T1 and T2 mapping in cardiac MRI can characterize different types of myocarditis with high sensitivity and specificity, serving as a complementary diagnostic tool to LLC. In a study by Baessler et al. (61), 39 patients with acute myocarditis with clinically suspected acute infarct-like myocarditis underwent MRI, endomyocardial biopsy, and cardiac catheterization. The study found that texture features, such as T2 gray-level nonuniformity and run-length nonuniformity, demonstrated superior diagnostic performance compared to mean T1, T2 values and LLC. In another study by the same group (80), 71 myocarditis patients exhibiting with symptoms of heart failure underwent myocardial biopsies, and texture analysis on T1 and T2 mapping images confirmed that radiomics-based texture analysis can be used as a complementary diagnostic tool in myocarditis.
Differentiating myocarditis from CAD using MRI is challenging because patients with myocarditis often present with chest pain similar to CAD, and atypical foci of LGE in myocarditis can appear subendocardial, resembling CAD manifestations. However, radiomics can help differentiate between myocardial infarction and myocarditis. In a study by Di Noto et al. (62), 111 patients with myocardial infarction and 62 patients with myocarditis underwent MRI. Features extracted from LGE images for texture, shape, and classificatory were analyzed by two independent physicians. The study concluded that LGE-based radiomics demonstrated high precision in differentiating myocardial infarction from myocarditis, correlating well with the subjective analyses by experienced physicians.
The application of radiomics in myocarditis is still emerging, with limited evidence available and requiring further evaluation. The lower prevalence of myocarditis compared to other diseases likely contributes to the scarcity of databases. However, current evidence suggests that radiomics can improve the diagnosis of myocarditis and effectively differentiate it from myocardial infarction (62).
Strengths and limitations
This review provides a comprehensive and standardized workflow for the application of radiomics to non-ischemic cardiomyopathies, which can serve as a practical guide for clinicians. By incorporating a detailed analysis of various cardiac MRI sequences and their specific roles in feature extraction, the review enhances the understanding of radiomics in cardiac imaging. Furthermore, the study bridges the gap between advanced imaging techniques and clinical practice, offering insights into how radiomics can aid in differentiating complex cardiac conditions. The inclusion of expert discussions serves to reinforce the relevance and applicability of the findings to real-world clinical scenarios.
Although this review offers a valuable framework for radiomics application, it is constrained by its reliance on existing studies that may not fully encompass all emerging advancements in cardiac imaging. Additionally, the review primarily focuses on non-ischemic cardiomyopathies, and thus, the applicability to ischemic heart diseases remains unexplored. Furthermore, the absence of large-scale, multi-center validation studies limits the generalizability of the proposed workflow across different clinical settings. It is therefore necessary for future research to refine the algorithms, enhance image acquisition techniques and validate the proposed approaches in broader patient populations.
Conclusions
In summary, our review highlights the transformative potential of radiomics in medical imaging, particularly for diagnosing non-ischemic cardiomyopathies. We have delineated a comprehensive workflow for radiomics, encompassing the acquisition of cardiac MRI images across various sequences, followed by feature extraction, feature engineering, model construction, and data analysis. This workflow serves as a guide for implementing radiomics in both clinical and research settings, with the aim of improving diagnostic accuracy and supporting the future integration of radiomics into personalized cardiac care. By standardizing these techniques, we seek to promote greater inter-institutional comparability and facilitate data sharing, thereby enriching collective efforts in managing cardiac conditions. Moving forward, we recommend that future research focuses on multi-center validation studies, leveraging technological advancements in image acquisition, and refining algorithms to further optimize the use of radiomics in enhancing cardiac diagnostics and treatment.
Acknowledgments
We would like to express our sincere gratitude to all colleagues who provided valuable insights, feedback, and assistance in polishing this manuscript.
Funding: This study was supported by
Footnote
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